6. Plot options

6.1. Plot composition (-draw, -bamplot)

It is possible to add track list to a plot using the -draw option. The default tracks list is coordinates bamplot base gene. bamplot contains coverage base read tracks.

• -draw : track list (default: -draw coordinates bamplot base gene)

• -bamplot : plot (default: -bamplot coverage base read)

  • -bamplot read : see more track options
  • -bamplot coverage : see more track options
  • -bamplot base : see more track options

6.2. Plot layout options

• -width : image file size : width (unit:px, default:1000)
• -height : image file size : height (unit:px)
• -bgcolor : background color (default:FFFFFF)
• -plot_margin_top : top margin size of plot
• -plot_margin_bottom : bottom margin size of plot
• -plot_margin_left : left margin size of plot
• -plot_margin_right : right margin size of plot
• -separator_height : separator’s height
• -border : draw border in plot