9. Base track (-draw base
, -bamplot base
)¶
9.1. Layout options¶
-base_fontsize
(default=9) : font size of base-base_height
(default=30) : base track height-base_margin_top
(default=0) : top margin size of base track-base_margin_bottom
(default=0) : bottom margin size of base track
9.2. Base track types¶
The base track has three formats which are automatically defined based on the width-span of the base.
$ bamsnap \
-bam ./data/NA12879.bam \
-draw bamplot \
-bamplot coverage base \
-pos chr10:117542948 \
-separator_height 0 \
-margin 500 \
-no_title \
-width 700 \
-plot_margin_top 0 \
-plot_margin_bottom 0 \
-out ./out/NATRIO_chr10_117542948_baseplot_ex1.png
$ bamsnap \
-bam ./data/NA12879.bam \
-draw bamplot \
-bamplot coverage base \
-pos chr10:117542948 \
-separator_height 0 \
-margin 50 \
-no_title \
-width 700 \
-plot_margin_top 0 \
-plot_margin_bottom 0 \
-out ./out/NATRIO_chr10_117542948_baseplot_ex2.png
$ bamsnap \
-bam ./data/NA12879.bam \
-draw bamplot \
-bamplot coverage base \
-pos chr10:117542948 \
-separator_height 0 \
-margin 10 \
-no_title \
-width 700 \
-plot_margin_top 0 \
-plot_margin_bottom 0 \
-out ./out/NATRIO_chr10_117542948_baseplot_ex3.png