Latest PyPI version Number of PyPI downloads Documentation of BamSnap Docker image

BamSnap is a visualization tool for aligned BAM files that allows to generate high-quality snapshots of read level data in high-throughput, processing up to thousands of files. BamSnap is a command-line software based on python.


Setting up BamSnap

In a command prompt or terminal window, run the following commands to install and test the software.

$ pip install bamsnap
$ bamsnap -bam test.bam -pos chr1:7364529 -out test.bam.png

More examples and commands are available in gallery. Use -h to list the options available for bamsnap.

$ bamsnap -h

Source code is available on github.