13. Version History¶
13.1. v0.2.x release series¶
- 0.2.13 (2020.09.13):
- adjust target line for deletion in VCF
- 0.2.12 (2020.09.15):
- adjust target line for deletion in VCF
- 0.2.11 (2020.09.08):
- adjust target line
- 0.2.10 (2020.09.08):
- debug ValueError when MD tag of read is missing (`issue #5<https://github.com/parklab/bamsnap/issues/5>`_)
- 0.2.9 (2020.09.03):
- add
insert_size_del_threshold
for deletion,insert_size_ins_threshold
for insertsion - add
read_color_deletion
for deletion,read_color_insersion
for insertion
- add
- 0.2.8 (2020.08.25):
- add
show_soft_clipped
option to show soft clipped part of reads. (=> manual and `issue #4<https://github.com/parklab/bamsnap/issues/4>`_)
- add
- 0.2.7 (2020.08.24):
- add
-read_color_by
option for strand and inter-chromosomal rearrangement (=> manual ) - convert pileup-based to fetch-based for read retrieval in drawreadset.py
- add
- 0.2.6 (2020.07.22):
- debug in saving JPG file.
- debug in coodinates axis location (middle)
- debug in base font size.
- update document.
- 0.2.5 (2020.07.17):
- add multiprocessing option(
-process
)
- add multiprocessing option(
- 0.2.4 (2020.07.15):
- fix bug in version number
- add separator height option
- add -ref_index_rebuild option (to prevent to rebuild a fasta index file, when the fasta index file is older than the fasta file.)
- update documentation
- 0.2.2 (2020.07.09):
- debug typos
- 0.2.0 (2020.06.09):
- add gene plot
- add base plot
- improve layout
- add coordinates
- add read group
13.2. v0.1.x release series¶
- 0.1 :
- basic read alignment view
13.3. Todo¶
- add SVG output
- add PDF output
- add bamviewer